PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0206s00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 178aa    MW: 19800.7 Da    PI: 9.4587
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0206s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY40.21.2e-1216582462
              YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaesh 62
                       vsvP +sl++v tvrCGhCtsllsvn++k+s    +lla+ s 
  Vradi0206s00170.1 16 VSVPCSSLSTVATVRCGHCTSLLSVNMNKTSffpfHLLASLSP 58
                       9***************************998677677777665 PP

2YABBY108.61.2e-3380143103165
              YABBY 103 enedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                        + e+e++p++   v++PPekrqr Psaynrfikeei+r+ka+nP+++hreafs+aaknWa fP+
  Vradi0206s00170.1  80 DCEEEKTPQTSSvVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPKMAHREAFSTAAKNWANFPP 143
                        34455666665559*************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.1E-4815143IPR006780YABBY protein
SuperFamilySSF470951.23E-987144IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.6E-694144IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLRRMWILYH NINGNVSVPC SSLSTVATVR CGHCTSLLSV NMNKTSFFPF HLLASLSPVE  60
PKGADKPLKK YSSSIVTYYD CEEEKTPQTS SVVNKPPEKR QRTPSAYNRF IKEEIKRLKA  120
ENPKMAHREA FSTAAKNWAN FPPSNCKGEA DSCKILHLES PNASQCGMGV SIYPTEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-56AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524586.11e-103PREDICTED: axial regulator YABBY 4-like
SwissprotQ9LDT31e-43YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A0L9TM391e-86A0A0L9TM39_PHAAN; Uncharacterized protein
STRINGGLYMA08G39290.22e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.16e-45YABBY family protein